Figure 2
Models of TR-mediated regulation of transcription based on the insights obtained from TR ChIP-seq experiments. Possible roles
of co-regulators are hypothesized based on in vitro binding data, animal models with altered co-regulator function, and a limited number of ChIP-PCR experiments. (A) Positively
and negatively regulated genes, where TR is recruited to an open chromatin region independently of T3 (based on classic bimodal switch model). On a positively regulated target gene, with a consensus DR-4 TR-binding site, in
the absence of TH RXR/TR heterodimer or TR/TR homodimer preferentially recruits co-repressor complex to repress transcription.
Upon binding of T3, a conformational change occurs that favors recruitment of co-activators to activate transcription. On negatively regulated
targets, with yet undetermined consensus binding site, co-repressor complexes are recruited in the absence of hormone to activate
transcription, while co-activators recruited to the liganded TR, mediate transcriptional repression. (B) Positively and negatively
regulated genes, where TR binding to open chromatin is affected by T3. On a positive target gene containing a DR-4-binding site, there is weak TR recruitment in the absence of hormone. In the
presence of T3, TR strongly binds to the response element and brings co-activator complexes to activate transcription. On a negatively regulated
gene, TR is recruited to DR-0 response element in the absence of hormone to activate transcription either through ligand-independent
recruitment of co-activators or by recruitment of co-repressors, which act as functional co-activators. Binding of T3 leads to dissociation of TR from DNA and diminished transcription of the target gene. (C) A positively regulated gene located
within a region of inaccessible chromatin and containing a strong DR-4 TR-binding motif. TR can only be recruited in the presence
of T3 to initiate chromatin remodeling and bring co-activator complex to activate transcription. (D) Negative TH-dependent regulation
mediated by indirect recruitment of TR and co-regulators through yet unidentified transcription factors (TF).