Figure 9
Structural models showing the extent of N-glycosylation of rat and human CBGs in stressed (high affinity with intact RCL) and relaxed (low affinity with cleaved RCL)
conformational states. (A) The rat CBG in its stressed conformation (PDB ID 2V95), with a close-up of the steroid-binding
site with the positions of H9, R10, and W362 colored orange. (B) Human CBG in its relaxed conformation (PDB ID 4BB2), with its cleaved RCL inserted as a β-sheet colored red. Models were generated using the PyMOL Molecular Graphics System software (http://pymol.org) and the online tool for in silico glycosylation of proteins GlyProt (http://glycosciences.de). The N-glycans attached in various positions are shown based on their reported most frequent compositions in human CBG (Sumer-Bayraktar
et al. 2011). N-glycans that could not be added because they are in regions of disorder in the crystal structures are indicated in boxes
(at N3 and N330 in rat CBG, and at N9 in human CBG). Notably, the comparison between stressed and relaxed CBG structures shows
the displacement of N347 with its associated N-glycan in human CBG after RCL cleavage. Both structures show β-sheets (blue), α-helixes (green), loops (cyan), and N-glycans in gray except those at N238 in human CBG and N230 in rat CBG (purple), and those attached to the cleaved RCL of human CBG (at N347) and the intact RCL of rat CBG (at N330), which are colored
orange.