Figure 3
Major PAM splice variants and PHM and PAL catalytic core structures. (A) The major splice variants (isoforms) of PAM are shown.
Although PAM-1 and PAM-2 are type 1 integral membrane proteins, PAM-3 is a soluble, secreted protein. (B) Crystal structure
of rat PHM (PDB identifier: 1OPM) in the oxidized state bound to a substrate, N-acetyl-3,5-diiodotyrosylglycine (shown in pink), rendered here using PyMOL; bound copper, green spheres. The copper-binding
site in the N-terminal domain of PHM (CuH, in yellow) is separated from the copper-binding site in the C-terminal domain (CuM, in blue) by an 11 Å solvent-filled cleft; the peptidylglycine substrate and molecular oxygen bind near CuM. Other essential catalytic residues involved in substrate binding (R240, Y318, and M320) are shown in purple. After considering many mechanisms, quantum mechanical tunneling is thought to facilitate electron transfer
from the CuH site, through solvent, to the CuM site (Francisco et al. 2004, Klinman 2006, McIntyre et al. 2010). (C). The structure of PAL (PDB identifier: 3FW0) crystallized in the presence of mercury ion (orange) instead of
zinc to capture the binding of a nonpeptide substrate (α-hydroxyhippuric acid, in blue) is shown. The six-bladed β-propeller
structure of PAL positions Zn near a key Tyr residue (shown in purple) and a key Arg residue (shown in green). The structurally
important calcium ion is depicted as a yellow sphere (Chufan et al. 2009).