Figure 3
Mapping and functional prediction of MEN2 mutations targeting the RET catalytic domain. (A) Surface representations with common
secondary structural and catalytic elements depicted in cartoon color coded. Glycine-rich loop (purple), αC helix (green),
catalytic loop (orange), DFG motif (magenta), activation loop (yellow), P + 1 loop (wheat) showing in blue common residues mutated in MEN2. Cartoon representation of: (B) phosphorylated RET catalytic
domain with two conformations of the glycine-rich loop and ATP-analogue. The closed glycine-rich loop conformer (non-competent
for ATP binding) is defined by a tether between residues E734, R912 and D771, in addition to F735in and E768out rotamers, whereas the open (ATP competent) glycine-rich loop is defined by F735out and E768in rotamers. (C) RET N-lobe and hydrophobic motif showing β4 L790 as part of the R-spine and hydrophobic pocket. Ret L790 is
caped from the top by W717 and points to αC helix F776 (i.e. hydrophobic pocket) and K789, and to the catalytically required
K758–E775 pair. (D) Hinge region of RET between the N- and C-lobes depicting the β5 the gate-keeper mutation V804M. This residue
can restrict nucleotide access to the active site, which in the case of RET substitution by a bulkier methionine (V804M) or
even a leucine (V804L) is associated with resistance to several type I (DFGin) TKIs (e.g. vandetanib), while retaining nucleotide accessibility.