Epigenetic dysregulation and poorer prognosis in DAXX-deficient pancreatic neuroendocrine tumours
- Christodoulos P Pipinikas1,*,
- Harpreet Dibra1,*,
- Anna Karpathakis1,
- Andrew Feber1,
- Marco Novelli2,
- Dahmane Oukrif2,
- Guiseppe Fusai3,
- Roberto Valente3,
- Martyn Caplin4,
- Tim Meyer1,4,
- Andrew Teschendorff1,5,
- Christopher Bell1,
- Tiffany J Morris1,
- Paolo Salomoni1,
- Tu-Vinh Luong6,
- Brian Davidson3,
- Stephan Beck1 and
- Christina Thirlwell1,4⇑
- 1Medical Genomics Laboratory, University College London Cancer Institute, University College London, 72 Huntley Street, London, WC1E 6BT, UK
- Department of Pathology, University College London, London, UK
- Department of Surgery, Royal Free Hospital, London, UK
- Royal Free Hospital NET Unit, London, UK
- CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Shanghai, 200031, China
- Department of Pathology, Royal Free Hospital, London, UK
- Correspondence should be addressed to C Thirlwell; Email: christina.thirlwell{at}ucl.ac.uk
Dear Editor,
Exome sequencing of sporadic pancreatic neuroendocrine tumours (PNETs) has identified mutually exclusive mutations in the chromatin regulators α-thalassaemia/mental retardation X-linked (ATRX) and death-associated protein 6 (DAXX) genes in 43% of cases (18 and 23% of cases respectively in 68 cases studied) (Elsässer et al. 2011, Jiao et al. 2011). ATRX and DAXX are chromatin remodellers; their loss leads to alternative lengthening of telomeres (ALT) and chromosomal instability (CIN) (Heaphy et al. 2011). ALT is a telomerase-independent mechanism for the maintenance of telomere stabilisation. Although it was initially reported that ATRX/DAXX mutant tumours had superior 10-year survival and outcome (Jiao et al. 2011), a recent larger study on 243 tumours demonstrated that ATRX and DAXX loss and associated ALT in PNETs correlates with CIN, advanced tumour stage, the development of metastases and poorer progression-free survival (PFS) and overall survival (OS) (Marinoni et al. 2014).
ATRX interacts with DNA methyltransferases 3A and 3L (DNMT3A/3L), known as ATRX-DNMT3A-DNMT3L (ADD) (Hashimoto et al. 2010). DNMT3A and its accessory protein, DNMT3L, contain a histone H3 lysine 4 (H3K4) methyl-interacting ADD domain which links DNA methylation with unmodified H3K4. This interaction is one of the three described protein domains that provide a functional link between DNA methylation and histone modification. These interactions are pivotal for maintaining accurate replication of histone methylation patterns in newly replicated chromatin and in the subsequent fidelity of gene expression. ATRX interacts directly with DAXX, which functions as a chaperone for the deposition of the histone variant H3.3 at repeat sequences across the genome, including CpG islands and telomeric, pericentric and ribosomal repeats (Clynes et al. 2013). DAXX is a highly specific histone chaperone that discriminates H3.3 from other H3 variants. Mutually exclusive mutations in ATRX and DAXX are also found in neurological …